Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs6601049 chr5:178982665 G/A 9.11E-7 131 41.97 43.02 73.72 KM Plot
TGCT rs6651216 chr8:116874954 A/C 7.29E-7 134 45.1 28.87 18.83 KM Plot
TGCT rs66540114 chr7:128720295 G/A 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs66595118 chr9:37056194 C/T 3.49E-5 130 35.37 65.05 45.1 KM Plot
TGCT rs66619975 chr4:47471076 ATCT/A 0.000134 133 45.47 36.63 51.6 KM Plot
TGCT rs66872377 chr7:128722172 A/C 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs66937140 chr7:53293928 GAGATGGCCCCTTCT/G 3.28E-13 130 41.33 43.53 8.6 KM Plot
TGCT rs66954515 chr3:172407699 A/ATT 2.56E-5 128 45.1 37.62 25.8 KM Plot
TGCT rs67077163 chr8:125587162 C/A 1.92E-5 132 41.97 46.77 22.68 KM Plot
TGCT rs67162942 chr6:42671861 AT/A 5.05E-6 128 38.2 49.93 23.82 KM Plot
TGCT rs6739099 chr2:54823310 G/A 6.44E-5 131 46.3 44.05 22.42 KM Plot
TGCT rs67395401 chr10:27573976 A/G 2.11E-12 129 42.27 45.83 20.6 KM Plot
TGCT rs67457439 chr2:54837729 A/T 6.89E-5 131 45.1 44.05 22.42 KM Plot
TGCT rs67536526 chr4:58371946 TTGC/T 0 133 42.1 53.83 0.5 KM Plot
TGCT rs67548443 chr2:3487332 A/ACTC 2.43E-5 131 40.57 66.17 25.32 KM Plot